JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SNX27_chr1_151607050_151704080	0/0	t0059	4832	2	0	0	2	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0060	4828	2	0	0	1	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0061	4813	2	2	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0062	4821	2	0	0	2	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0063	4818	2	0	0	0	2	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0064	4834	2	0	2	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0065	4829	2	0	0	2	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0066	4813	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0067	4824	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0068	4808	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0069	4816	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0070	4824	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0071	4808	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0072	4817	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0073	4807	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0074	4811	1	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0075	4815	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0076	4818	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0077	4822	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0078	4826	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0079	4808	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0080	4823	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0081	4820	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0082	4804	1	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0083	4813	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0084	4816	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0085	4816	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0086	4820	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0087	4821	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0088	4828	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0089	4824	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0090	4816	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0091	4820	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0092	4832	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0093	4824	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0094	4804	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0095	4836	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0096	4832	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0097	4832	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0098	4819	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0099	4820	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0100	4823	1	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/1	t0101	4831	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0102	4815	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0103	4823	1	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0104	4823	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0105	4827	1	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0106	4848	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0107	4839	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0108	4840	1	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080