JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX27_chr1_151607050_151704080	0/0	t0109	4823	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0110	4827	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0111	4827	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0112	4831	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0113	4817	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0114	4809	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0115	4813	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0116	4821	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0117	4829	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0118	4833	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0119	4829	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0120	4841	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0121	4812	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0122	4812	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0123	4816	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0124	4824	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0125	4836	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0126	4820	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0127	4828	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0128	4824	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0129	4832	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0130	4820	1	0	0	0	1	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0131	4836	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0132	4834	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0133	4806	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0134	4818	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0135	4822	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0136	4834	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0137	4817	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0138	4825	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0139	4833	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0140	4835	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0141	4822	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0142	4803	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0143	4819	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0144	4813	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0145	4805	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0146	4817	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0147	4818	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0148	4822	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0149	4818	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0150	4794	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0151	4798	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0152	4802	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0153	4822	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0154	4810	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0155	4815	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0156	4827	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0157	4826	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0158	4819	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080