JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX27_chr1_151607050_151704080	0/0	t0159	4831	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0160	4814	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0161	4834	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0162	4827	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0163	4823	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0164	4822	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0165	4827	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0166	4819	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0167	4815	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0168	4827	1	0	0	0	0	1	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0169	4828	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0170	4820	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0171	4831	1	0	1	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0172	4801	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0173	4817	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0174	4823	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0175	4821	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0176	4822	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0177	4821	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0178	4825	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	t0179	4827	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX29_chr16_11971734_12579287	0/0	t0001	5724	13	1	5	1	4	2	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0002	5724	11	8	2	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0003	5732	7	1	1	5	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0004	5727	6	0	5	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0005	5733	6	0	0	4	0	2	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0006	5733	3	1	0	1	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0007	5725	3	2	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0008	5724	3	0	2	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0009	5725	3	0	3	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0010	5733	3	2	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0011	5731	2	0	1	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0012	5731	2	1	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0013	5727	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0014	5724	2	0	0	2	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0015	5726	2	0	1	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0016	5725	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0017	5724	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0018	5731	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0019	5726	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0020	5732	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0021	5732	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0022	5733	2	0	2	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0023	5732	2	0	0	0	0	2	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0024	5729	2	1	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0025	5733	2	0	1	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0026	5729	2	0	1	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0027	5727	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0028	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0029	5733	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287