JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX29_chr16_11971734_12579287	0/0	t0030	5731	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0031	5733	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0032	5733	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	1/0	t0033	5732	1	0	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0034	5733	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0035	5728	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0036	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0037	5731	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0038	5725	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0039	5727	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0040	5727	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0041	5724	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0042	5724	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0043	5728	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0044	5726	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0045	5726	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0046	5723	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0047	5723	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0048	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0049	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0050	5725	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0051	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0052	5726	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0053	5726	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0054	5724	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0055	5724	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0056	5724	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0057	5724	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0058	5727	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0059	5726	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0060	5725	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0061	5725	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0062	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0063	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0064	5726	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0065	5738	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0066	5732	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0067	5733	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0068	5727	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0069	5727	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0070	5727	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0071	5734	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/1	t0072	5733	1	0	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0073	5733	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0074	5733	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0075	5733	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0076	5733	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0077	5725	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0078	5732	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0079	5732	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287