Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BGN_chrX_153489980_153514546	0/0	t0060	1239	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0061	1249	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0062	1237	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0063	1253	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0064	1249	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0065	1243	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0066	1212	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0067	1213	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0068	1233	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0069	1208	1	0	0	0	1	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0070	1241	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0071	1247	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0072	1251	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0073	1243	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0074	1251	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0075	1247	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0076	1243	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0077	1212	1	0	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0078	1241	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0079	1249	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0080	1257	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0081	1235	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0082	1251	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0083	1235	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0084	1235	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0085	1210	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0086	1237	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0087	1243	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0088	1218	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0089	1248	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0090	1239	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	t0091	1253	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BHLHA15_chr7_98206439_98220457	1/1	t0001	2693	134	32	30	49	10	11	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0002	2693	83	7	16	42	2	16	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0003	2694	69	1	10	55	0	3	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0004	2693	43	19	7	12	0	5	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0005	2693	18	0	3	10	0	5	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0006	2693	13	0	3	6	0	4	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0007	2694	8	0	3	5	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0008	2693	7	0	6	0	0	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0009	2693	6	1	0	5	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0010	2693	6	6	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0011	2693	5	5	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0012	2693	5	5	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0013	2693	4	4	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0014	2673	4	4	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0015	2693	4	1	1	0	1	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0016	2693	4	0	0	4	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0017	2695	2	0	0	2	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0018	2694	2	0	0	2	0	0	copy fasta	BHLHA15	chr7	98206439	98220457