JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX29_chr16_11971734_12579287	0/0	t0080	5732	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0081	5732	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0082	5732	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0083	5732	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0084	5732	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0085	5732	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0086	5724	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0087	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0088	5731	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0089	5731	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0090	5731	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0091	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0092	5732	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0093	5733	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0094	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0095	5733	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0096	5731	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0097	5734	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0098	5731	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0099	5727	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0100	5721	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0101	5734	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0102	5733	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0103	5733	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0104	5744	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0105	5732	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0106	5736	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0107	5728	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0108	5740	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0109	5740	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0110	5728	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0111	5733	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	t0112	5723	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX2_chr5_122770080_122839543	0/0	t0001	4914	89	11	21	43	3	11	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0002	4908	63	5	2	49	1	6	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0003	4921	24	5	12	2	2	3	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/1	t0004	4920	24	1	9	7	2	4	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0005	4915	12	4	2	6	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0006	4911	12	0	0	11	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	1/0	t0007	4920	9	1	2	2	1	2	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0008	4916	9	0	0	9	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0009	4912	7	0	0	7	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0010	4905	7	7	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0011	4923	6	6	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0012	4913	6	1	1	3	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0013	4922	5	3	2	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0014	4935	5	4	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0015	4903	5	5	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0016	4910	4	0	1	2	1	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0017	4924	3	0	2	0	1	0	copy fasta	SNX2	chr5	122770080	122839543