JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX2_chr5_122770080_122839543	0/0	t0018	4922	3	1	1	0	1	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0019	4922	3	2	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0020	4921	3	3	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0021	4918	3	3	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0022	4914	3	0	0	3	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0023	4910	3	3	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0024	4911	3	0	0	2	1	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0025	4909	3	0	0	3	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0026	4905	3	3	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0027	4921	2	0	2	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0028	4918	2	2	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0029	4914	2	2	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0030	4914	2	0	0	2	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0031	4911	2	0	2	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0032	4905	2	2	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0033	4905	2	0	0	1	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0034	4905	2	2	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0035	4920	1	0	0	0	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0036	4927	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0037	4911	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0038	4926	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0039	4925	1	0	0	0	1	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0040	4924	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0041	4924	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0042	4924	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0043	4923	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0044	4920	1	0	0	0	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0045	4922	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0046	4920	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0047	4922	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0048	4918	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0049	4918	1	0	0	0	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0050	4919	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0051	4918	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0052	4917	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0053	4915	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0054	4904	1	0	0	0	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0055	4915	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0056	4914	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0057	4914	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0058	4914	1	0	0	0	0	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0059	4914	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0060	4912	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0061	4912	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0062	4912	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0063	4913	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0064	4911	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0065	4910	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0066	4910	1	0	1	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0067	4909	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543