JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX2_chr5_122770080_122839543	0/0	t0068	4908	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0069	4907	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0070	4907	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0071	4906	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0072	4905	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	t0073	4916	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX30_chr9_112745760_112879987	0/0	t0001	6384	79	1	15	54	4	5	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0002	6386	69	21	15	17	4	12	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0003	6388	49	7	11	23	2	6	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/1	t0004	6387	24	5	4	11	2	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0005	6387	20	8	1	8	0	3	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0006	6388	9	0	4	5	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0007	6387	5	5	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0008	6387	5	3	0	0	0	2	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0009	6388	5	3	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0010	6386	5	0	0	4	0	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	1/0	t0011	6387	4	0	0	0	3	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0012	6387	3	3	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0013	6388	3	0	0	2	0	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0014	6386	3	0	0	3	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0015	6386	2	2	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0016	6387	2	1	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0017	6384	2	0	2	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0018	6385	2	0	0	1	0	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0019	6387	2	0	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0020	6385	2	1	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0021	6387	2	2	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0022	6386	2	0	2	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0023	6386	2	0	2	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0024	6388	2	0	0	0	2	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0025	6387	2	2	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0026	6389	2	0	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0027	6388	2	0	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0028	6384	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0029	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0030	6387	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0031	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0032	6388	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0033	6384	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0034	6384	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0035	6383	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0036	6386	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0037	6386	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0038	6386	1	0	0	0	1	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0039	6387	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0040	6386	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0041	6387	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0042	6388	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0043	6387	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0044	6389	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987