JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX30_chr9_112745760_112879987	0/0	t0045	6388	1	0	0	0	0	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0046	6387	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0047	6387	1	0	0	0	0	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0048	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0049	6387	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0050	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0051	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0052	6385	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0053	6387	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0054	6389	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0055	6389	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	t0056	6387	1	0	0	1	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX31_chr8_100567889_100654665	1/0	t0001	1128	97	25	19	41	7	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0002	1128	80	29	14	28	1	8	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/1	t0003	1128	35	12	7	6	2	7	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0004	1128	34	8	12	8	0	6	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0005	1128	28	7	10	6	1	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0006	1128	14	4	2	1	1	6	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0007	1052	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0008	1139	2	0	2	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0009	1128	2	2	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0010	1128	2	0	0	0	0	2	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0011	1052	2	2	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0012	1128	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0013	1128	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0014	1128	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0015	1128	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	t0016	1128	1	0	0	0	0	1	copy fasta	SNX31	chr8	100567889	100654665
SNX32_chr11_65828963_65858701	0/1	t0001	470	149	17	30	64	12	25	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	1/0	t0002	470	140	59	19	59	1	1	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	t0003	470	91	3	20	51	1	16	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	t0004	470	7	6	1	0	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	t0005	470	2	2	0	0	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	t0006	470	1	1	0	0	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX33_chr15_75642912_75667301	0/1	t0001	6278	114	28	28	30	8	19	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	1/0	t0002	6278	79	0	13	56	0	9	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0003	6277	46	2	11	21	5	7	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0004	6278	24	0	1	22	0	1	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0005	6278	20	0	0	20	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0006	6278	13	13	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0007	6278	13	5	4	0	0	4	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0008	6278	7	6	1	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0009	6278	7	0	1	6	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0010	6278	6	2	1	2	0	1	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0011	6278	5	5	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0012	6277	5	0	0	5	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0013	6278	5	5	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0014	6278	5	0	0	4	0	1	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0015	6278	4	4	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0016	6276	3	0	0	3	0	0	copy fasta	SNX33	chr15	75642912	75667301