JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX33_chr15_75642912_75667301	0/0	t0067	6278	1	0	0	1	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0068	6278	1	1	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0069	6278	1	1	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	t0070	6279	1	0	1	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX3_chr6_108206222_108266040	1/1	t0001	1047	281	71	43	123	11	31	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0002	1047	39	1	8	21	1	8	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0003	1047	14	13	1	0	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0004	1047	8	8	0	0	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0005	1050	5	0	0	5	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0006	1048	3	3	0	0	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0007	1047	2	0	0	2	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0008	1047	2	2	0	0	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0009	1047	1	0	0	0	0	1	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	t0010	1047	1	0	0	1	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX4_chr3_125441650_125525202	1/1	t0001	1160	261	66	53	105	9	26	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	t0002	1160	98	21	19	49	1	8	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	t0003	1144	1	1	0	0	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX5_chr20_17936600_17973794	1/1	t0001	1127	305	69	57	128	13	36	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0002	1127	27	6	12	4	3	2	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0003	1127	25	2	0	21	0	2	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0004	1127	16	14	2	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0005	1127	4	0	0	4	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0006	1127	2	0	0	2	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0007	1127	2	0	0	2	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0008	1127	2	0	2	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0009	1127	1	0	0	1	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0010	1127	1	0	0	1	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0011	1127	1	1	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0012	1127	1	1	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0013	1127	1	1	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0014	1127	1	0	0	0	0	1	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0015	1127	1	1	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0016	1127	1	1	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0017	1127	1	0	0	0	0	1	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0018	1127	1	0	1	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	t0019	1127	1	0	0	1	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX6_chr14_34556093_34635148	0/0	t0001	2062	133	12	27	73	4	17	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	1/1	t0002	2062	87	29	10	32	3	11	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0003	2061	34	2	17	10	1	4	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0004	2062	29	27	1	0	0	1	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0005	2063	7	4	3	0	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0006	2062	6	5	0	0	1	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0007	2062	5	5	0	0	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0008	2062	3	3	0	0	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0009	2061	3	0	0	3	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0010	2061	2	0	0	0	0	2	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0011	2061	2	0	0	0	1	1	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0012	2062	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0013	2061	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0014	2061	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148