JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX6_chr14_34556093_34635148	0/0	t0015	2062	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0016	2062	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0017	2062	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0018	2062	1	0	0	0	1	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0019	2062	1	1	0	0	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0020	2061	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0021	2061	1	0	0	0	1	0	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	t0022	2062	1	0	0	1	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX7_chr1_98656721_98765500	1/1	t0001	381	376	83	62	179	10	40	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	t0002	381	1	0	0	1	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	t0003	381	1	1	0	0	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX8_chr7_2246770_2319441	0/0	t0001	3307	90	2	17	57	5	9	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0002	3293	45	11	6	19	3	6	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/1	t0003	3309	38	5	13	8	2	9	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	1/0	t0004	3307	32	3	2	22	1	3	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0005	3294	25	22	3	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0006	3307	13	13	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0007	3295	12	0	1	9	0	2	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0008	3332	12	10	2	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0009	3290	9	0	0	9	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0010	3313	9	0	0	9	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0011	3309	8	0	6	0	0	2	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0012	3294	7	7	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0013	3309	6	0	3	0	0	3	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0014	3309	5	5	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0015	3308	4	0	0	4	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0016	3307	4	0	3	0	1	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0017	3254	4	1	0	0	0	3	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0018	3254	4	4	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0019	3293	3	0	1	0	0	2	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0020	3307	3	0	3	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0021	3294	3	3	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0022	3301	2	1	0	0	1	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0023	3301	2	2	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0024	3307	2	0	1	0	1	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0025	3295	2	0	0	2	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0026	3293	2	0	1	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0027	3313	2	0	2	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0028	3294	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0029	3307	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0030	3307	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0031	3282	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0032	3307	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0033	3321	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0034	3309	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0035	3301	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0036	3296	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0037	3293	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0038	3294	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0039	3310	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441