JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SNX8_chr7_2246770_2319441	0/0	t0040	3301	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0041	3301	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0042	3309	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0043	3293	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0044	3293	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0045	3301	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0046	3307	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0047	3308	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0048	3305	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	t0049	3307	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX9_chr6_157818246_157950077	1/0	t0001	2429	178	39	26	80	10	22	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0002	2429	52	0	8	36	2	6	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/1	t0003	2429	34	14	7	1	2	9	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0004	2429	7	6	1	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0005	2429	6	6	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0006	2429	4	1	0	3	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0007	2429	2	2	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0008	2429	2	0	2	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0009	2429	2	0	2	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0010	2429	2	0	2	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0011	2429	2	2	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0012	2429	1	0	0	0	0	1	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0013	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0014	2429	1	0	0	1	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0015	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0016	2429	1	0	0	1	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0017	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0018	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0019	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0020	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0021	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	t0022	2429	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SOAT1_chr1_179288797_179363680	0/0	t0001	5186	77	6	15	44	2	10	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0002	5187	60	2	3	43	1	11	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/1	t0003	5189	29	3	10	10	2	3	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0004	5186	24	4	9	6	3	2	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	1/0	t0005	5188	19	3	5	5	1	4	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0006	5185	14	1	5	8	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0007	5190	13	0	5	7	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0008	5188	11	10	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0009	5188	10	1	0	9	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0010	5186	8	7	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0011	5188	6	4	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0012	5188	5	5	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0013	5186	4	0	2	1	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0014	5187	4	0	0	4	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0015	5188	4	3	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0016	5187	4	4	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0017	5188	4	0	4	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0018	5187	4	1	2	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680