JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOAT1_chr1_179288797_179363680	0/0	t0019	5190	4	1	2	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0020	5187	3	0	0	3	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0021	5185	3	0	0	3	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0022	5191	3	3	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0023	5185	2	1	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0024	5187	2	0	0	2	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0025	5189	2	0	1	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0026	5188	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0027	5188	2	0	0	2	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0028	5187	2	0	0	1	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0029	5188	2	0	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0030	5191	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0031	5185	2	0	1	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0032	5186	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0033	5189	2	0	0	0	1	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0034	5188	2	0	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0035	5187	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0036	5186	2	1	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0037	5188	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0038	5186	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0039	5186	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0040	5191	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0041	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0042	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0043	5186	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0044	5186	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0045	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0046	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0047	5186	1	0	0	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0048	5190	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0049	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0050	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0051	5186	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0052	5187	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0053	5187	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0054	5187	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0055	5187	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0056	5187	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0057	5187	1	0	0	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0058	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0059	5187	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0060	5184	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0061	5185	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0062	5185	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0063	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0064	5187	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0065	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0066	5188	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0067	5187	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0068	5187	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680