JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOAT1_chr1_179288797_179363680	0/0	t0069	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0070	5188	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0071	5177	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0072	5189	1	0	0	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0073	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0074	5189	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0075	5188	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0076	5186	1	0	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	t0077	5191	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT2_chr12_53098486_53129535	1/1	t0001	505	293	53	46	152	5	35	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0002	505	69	6	12	43	1	7	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0003	501	15	13	2	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0004	500	12	11	1	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0005	509	7	5	1	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0006	505	5	3	1	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0007	501	4	2	0	2	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0008	500	2	1	0	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0009	505	1	1	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0010	505	1	0	1	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	t0011	509	1	1	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOBP_chr6_107485117_107666306	1/0	t0001	3604	91	24	5	47	3	11	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/1	t0002	3605	40	4	8	20	3	4	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0003	3605	38	5	12	18	1	2	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0004	3605	22	0	5	14	0	3	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0005	3605	11	7	0	3	0	1	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0006	3604	6	4	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0007	3607	6	6	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0008	3608	6	5	1	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0009	3604	5	0	0	5	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0010	3607	5	0	0	5	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0011	3605	4	4	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0012	3605	3	0	0	3	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0013	3604	3	0	1	1	1	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0014	3605	3	0	0	0	0	3	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0015	3608	3	0	0	3	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0016	3604	3	1	2	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0017	3604	2	0	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0018	3605	2	0	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0019	3605	2	1	0	0	0	1	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0020	3605	2	2	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0021	3604	2	1	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0022	3604	2	2	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0023	3608	2	0	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0024	3608	2	0	0	2	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0025	3605	2	2	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0026	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0027	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0028	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0029	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0030	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306