JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BHLHA15_chr7_98206439_98220457	0/0	t0019	2693	2	0	1	0	1	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0020	2693	2	2	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0021	2693	2	0	0	2	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0022	2693	2	2	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0023	2693	2	0	0	2	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0024	2694	2	2	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0025	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0026	2693	1	0	1	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0027	2693	1	0	1	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0028	2694	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0029	2694	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0030	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0031	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0032	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0033	2693	1	0	0	0	0	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0034	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0035	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0036	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0037	2694	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0038	2693	1	0	0	0	0	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0039	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0040	2693	1	0	1	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0041	2693	1	0	0	0	1	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0042	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0043	2693	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0044	2693	1	0	0	0	0	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0045	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0046	2693	1	0	1	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0047	2694	1	0	0	0	0	1	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0048	2693	1	0	0	0	1	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0049	2724	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0050	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	t0051	2693	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA9_chr17_1265444_1276815	1/1	t0001	665	279	58	54	114	12	39	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0002	665	142	24	27	78	6	7	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0003	672	6	0	3	3	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0004	665	4	4	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0005	665	4	4	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0006	665	3	3	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0007	665	1	1	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0008	665	1	1	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0009	665	1	1	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	t0010	665	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHE22_chr8_64575365_64588627	1/1	t0001	2118	363	59	67	179	15	41	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0002	2120	18	11	3	1	0	3	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0003	2119	16	16	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0004	2118	11	5	3	0	1	2	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0005	2118	11	0	0	11	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0006	2120	3	2	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0007	2118	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627