JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOBP_chr6_107485117_107666306	0/0	t0031	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0032	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0033	3605	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0034	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0035	3606	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0036	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0037	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0038	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0039	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0040	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0041	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0042	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0043	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0044	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0045	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0046	3604	1	0	0	0	0	1	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0047	3604	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0048	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0049	3604	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0050	3605	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0051	3605	1	0	1	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0052	3605	1	1	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0053	3608	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	t0054	3604	1	0	1	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOCS1_chr16_11249417_11261204	0/1	t0001	603	340	46	67	181	16	29	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0002	602	55	24	8	11	2	10	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0003	603	8	7	1	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0004	602	7	7	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	1/0	t0005	603	5	4	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0006	603	5	0	0	5	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0007	603	3	0	0	3	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0008	603	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0009	592	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0010	603	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0011	602	1	0	0	0	0	1	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0012	602	1	0	0	0	0	1	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0013	603	1	0	0	1	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0014	603	1	0	0	1	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0015	602	1	0	0	0	0	1	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	t0016	603	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS2_chr12_93567675_93581745	1/0	t0001	1790	275	78	38	116	11	31	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/1	t0002	1790	113	2	17	84	4	5	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0003	1791	12	0	12	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0004	1790	11	9	0	0	0	2	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0005	1790	6	0	5	0	1	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0006	1790	5	0	2	1	0	2	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0007	1790	4	4	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0008	1790	3	3	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0009	1790	2	0	0	0	0	2	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0010	1790	1	0	1	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745