JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOCS2_chr12_93567675_93581745	0/0	t0011	1790	1	0	0	1	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0012	1790	1	1	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0013	1790	1	0	1	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0014	1791	1	0	1	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0015	1790	1	0	1	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	t0016	1790	1	1	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS3_chr17_78351778_78365077	0/1	t0001	2057	166	34	44	50	9	28	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0002	2057	126	40	22	53	1	10	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0003	2057	58	1	7	47	3	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0004	2057	51	5	1	40	0	5	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	1/0	t0005	2057	8	6	1	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0006	2057	8	0	0	8	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0007	2057	8	0	0	6	0	2	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0008	2057	7	0	5	0	1	1	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0009	2057	6	0	3	3	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0010	2057	3	0	0	3	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0011	2057	2	0	0	1	1	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0012	2057	2	2	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0013	2057	2	2	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0014	2057	2	0	0	2	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0015	2056	2	2	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0016	2057	2	0	2	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0017	2057	2	2	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0018	2057	2	0	0	2	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0019	2057	1	0	0	1	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0020	2057	1	0	1	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0021	2057	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0022	2057	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0023	2057	1	0	0	0	1	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0024	2057	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0025	2057	1	0	0	1	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0026	2057	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0027	2068	1	0	0	1	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0028	2057	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	t0029	2056	1	1	0	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS4_chr14_55022236_55054489	1/1	t0001	5581	192	21	33	106	9	21	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0002	5585	76	16	12	44	0	4	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0003	5586	35	10	7	7	6	5	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0004	5586	11	10	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0005	5587	9	8	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0006	5585	8	0	8	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0007	5586	7	6	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0008	5586	6	2	0	2	0	2	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0009	5586	6	0	1	1	0	4	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0010	5578	3	0	0	3	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0011	5583	3	3	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0012	5586	3	3	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0013	5586	3	3	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0014	5583	2	1	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0015	5579	2	0	0	0	0	2	copy fasta	SOCS4	chr14	55022236	55054489