JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOCS4_chr14_55022236_55054489	0/0	t0016	5581	2	0	0	2	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0017	5586	2	2	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0018	5586	2	2	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0019	5581	2	2	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0020	5586	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0021	5586	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0022	5579	1	0	0	0	0	1	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0023	5585	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0024	5581	1	0	0	1	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0025	5581	1	0	0	0	0	1	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0026	5581	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0027	5581	1	0	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0028	5581	1	0	0	0	0	1	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0029	5581	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0030	5581	1	0	0	1	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0031	5581	1	0	0	1	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0032	5581	1	0	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0033	5585	1	0	0	0	1	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0034	5585	1	0	0	0	0	1	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0035	5586	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0036	5586	1	0	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0037	5586	1	1	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0038	5585	1	0	0	1	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	t0039	5581	1	0	0	1	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS5_chr2_46694295_46768129	0/0	t0001	3156	103	12	12	71	1	7	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	1/0	t0002	3156	94	8	8	61	4	12	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/1	t0003	3156	63	12	21	14	5	10	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0004	3156	26	23	2	0	0	1	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0005	3156	23	2	10	7	2	2	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0006	3154	20	5	8	5	0	2	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0007	3156	15	11	4	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0008	3144	6	5	1	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0009	3156	4	0	0	4	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0010	3156	4	0	1	0	2	1	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0011	3156	4	0	1	1	1	1	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0012	3156	3	1	0	1	1	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0013	3156	3	0	2	0	0	1	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0014	3156	2	2	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0015	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0016	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0017	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0018	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0019	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0020	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0021	3156	1	0	0	1	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0022	3156	1	0	0	1	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0023	3156	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	t0024	3156	1	0	0	0	0	1	copy fasta	SOCS5	chr2	46694295	46768129
SOCS6_chr18_70284045_70335199	1/0	t0001	4096	209	37	36	89	8	38	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0002	4096	36	21	2	8	2	3	copy fasta	SOCS6	chr18	70284045	70335199