JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOCS6_chr18_70284045_70335199	0/1	t0003	4096	23	8	3	7	3	1	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0004	4096	23	8	11	3	0	1	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0005	4096	20	0	0	20	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0006	4096	9	2	3	3	0	1	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0007	4096	4	0	0	0	0	4	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0008	4099	4	0	0	4	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0009	4096	3	3	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0010	4096	3	3	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0011	4096	2	2	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0012	4096	2	2	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0013	4096	2	1	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0014	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0015	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0016	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0017	4096	1	0	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0018	4096	1	0	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0019	4096	1	0	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0020	4096	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0021	4096	1	0	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0022	4096	1	0	0	0	1	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0023	4096	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0024	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0025	4077	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0026	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0027	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0028	4096	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0029	4096	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0030	4096	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	t0031	4096	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS7_chr17_38346844_38410593	0/1	t0001	6321	127	18	27	53	8	20	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0002	6321	34	11	7	10	3	3	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0003	6321	12	0	0	12	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0004	6321	10	0	0	10	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0005	6321	10	2	7	0	1	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0006	6321	7	7	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0007	6323	5	5	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0008	6321	5	5	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0009	6321	5	0	0	5	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0010	6321	5	5	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0011	6332	5	3	2	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0012	6321	4	0	4	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0013	6323	3	3	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0014	6321	3	3	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0015	6321	3	3	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0016	6321	3	3	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0017	6323	2	2	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0018	6321	2	2	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0019	6321	2	2	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0020	6322	2	0	0	2	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0021	6321	2	0	0	0	0	2	copy fasta	SOCS7	chr17	38346844	38410593