JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOCS7_chr17_38346844_38410593	0/0	t0022	6321	2	0	0	1	0	1	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0023	6323	2	0	0	2	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0024	6321	2	2	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0025	6321	2	0	0	2	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0026	6321	2	0	0	2	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0027	6321	1	0	0	0	1	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0028	6321	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0029	6323	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0030	6323	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0031	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0032	6323	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0033	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0034	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0035	6321	1	0	0	0	0	1	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0036	6321	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0037	6323	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0038	6331	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0039	6322	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0040	6321	1	0	0	0	1	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0041	6321	1	0	0	1	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0042	6321	1	0	0	1	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0043	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0044	6321	1	0	0	0	0	1	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0045	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0046	6321	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0047	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0048	6321	1	0	0	0	0	1	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0049	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0050	6321	1	1	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0051	6321	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0052	6321	1	0	0	0	0	1	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0053	6323	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	t0054	6321	1	0	0	1	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOD1_chr21_31654693_31673931	1/1	t0001	431	407	89	76	176	16	48	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	t0002	431	14	0	1	13	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	t0003	431	3	2	1	0	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	t0004	431	1	0	0	1	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	t0005	431	1	1	0	0	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD2_chr6_159664069_159698241	0/0	t0001	13496	68	4	13	35	5	11	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	1/0	t0002	13499	59	6	3	44	1	4	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0003	13495	26	9	4	7	1	5	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/1	t0004	13491	24	9	8	0	2	4	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0005	13499	14	14	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0006	13495	13	1	8	4	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0007	13499	10	10	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0008	13496	8	0	0	8	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0009	13491	8	0	0	8	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0010	13491	7	0	7	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0011	13495	7	7	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0012	13497	5	0	1	2	0	2	copy fasta	SOD2	chr6	159664069	159698241