JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOD2_chr6_159664069_159698241	0/0	t0063	13493	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0064	13501	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0065	13491	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0066	13491	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0067	13491	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0068	13491	1	0	0	0	0	1	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0069	13491	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0070	13491	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0071	13491	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0072	13492	1	0	0	0	0	1	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0073	13494	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0074	13494	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0075	13499	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0076	13495	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0077	13499	1	0	0	0	1	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0078	13499	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0079	13499	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0080	13499	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0081	13499	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0082	13499	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0083	13495	1	1	0	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0084	13495	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0085	13496	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0086	13495	1	0	0	0	0	1	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0087	13495	1	0	0	0	0	1	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0088	13495	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0089	13495	1	0	0	0	1	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0090	13495	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0091	13495	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0092	13500	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0093	13496	1	0	1	0	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/0	t0094	13496	1	0	0	1	0	0	copy fasta	SOD2	chr6	159664069	159698241
SOD3_chr4_24790573_24805842	0/0	t0001	694	249	59	25	132	7	26	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/1	t0002	694	159	5	55	72	9	17	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0003	694	43	27	5	7	1	3	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0004	694	5	3	1	1	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0005	694	5	5	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0006	694	2	0	0	2	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	1/0	t0007	694	1	0	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0008	694	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	t0009	694	1	0	0	0	1	0	copy fasta	SOD3	chr4	24790573	24805842
SOGA1_chr20_36772447_36868538	0/0	t0001	9233	110	26	24	41	8	11	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	1/0	t0002	9233	42	0	8	28	1	4	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/1	t0003	9233	30	3	13	2	3	8	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0004	9229	13	11	2	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0005	9233	7	1	1	0	1	4	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0006	9233	6	5	0	0	1	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0007	9233	5	0	5	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0008	9233	5	4	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0009	9233	4	4	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538