JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOGA1_chr20_36772447_36868538	0/0	t0010	9233	4	1	3	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0011	9233	3	0	1	0	1	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0012	9233	3	3	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0013	9233	3	3	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0014	9233	3	1	1	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0015	9233	3	3	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0016	9233	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0017	9233	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0018	9233	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0019	9233	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0020	9233	2	0	0	2	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0021	9233	1	0	0	0	1	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0022	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0023	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0024	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0025	9233	1	0	0	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0026	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0027	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0028	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0029	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0030	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0031	9233	1	0	0	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0032	9233	1	0	0	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0033	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0034	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0035	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0036	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0037	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0038	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0039	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0040	9233	1	0	0	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0041	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0042	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0043	9233	1	0	0	0	0	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0044	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0045	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0046	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0047	9233	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0048	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0049	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0050	9233	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	t0051	9233	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA3_chr6_127467974_127524335	0/0	t0001	1152	153	10	44	86	3	10	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	1/1	t0002	1153	85	53	8	11	3	8	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0003	1153	45	15	17	1	5	7	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0004	1153	44	2	2	31	1	8	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0005	1153	8	7	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0006	1153	5	5	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0007	1153	3	1	0	0	0	2	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0008	1153	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335