JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOGA3_chr6_127467974_127524335	0/0	t0009	1152	1	1	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	t0010	1152	1	0	0	0	0	1	copy fasta	SOGA3	chr6	127467974	127524335
SOHLH1_chr9_135688407_135704481	1/1	t0001	205	416	96	76	178	14	50	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	t0002	205	1	0	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	t0003	205	1	0	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH2_chr13_36163217_36219556	1/1	t0001	848	367	62	57	196	13	37	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0002	848	42	16	12	0	5	9	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0003	848	4	4	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0004	848	3	3	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0005	848	2	2	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0006	848	1	1	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	t0007	848	1	0	1	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SON_chr21_33538038_33582481	0/1	t0001	1114	355	88	65	156	12	33	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	t0002	1114	5	0	2	0	0	3	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	t0003	1114	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	1/0	t0004	1113	1	0	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	t0005	1114	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	t0006	1114	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SORBS1_chr10_95306773_95566371	0/1	t0001	3469	71	25	11	22	2	10	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	1/0	t0002	3470	57	21	9	9	5	12	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0003	3470	46	10	7	26	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0004	3471	37	0	2	31	1	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0005	3470	17	1	1	9	0	6	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0006	3470	6	0	2	0	1	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0007	3470	6	1	1	4	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0008	3470	5	0	0	5	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0009	3470	4	0	0	4	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0010	3471	4	0	0	0	0	4	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0011	3470	3	3	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0012	3469	3	0	0	0	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0013	3469	3	3	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0014	3471	3	0	0	3	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0015	3468	3	1	1	0	1	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0016	3470	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0017	3470	2	1	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0018	3471	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0019	3471	2	0	2	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0020	3471	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0021	3469	2	0	2	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0022	3469	2	0	0	2	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0023	3471	2	0	0	2	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0024	3469	1	0	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0025	3470	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0026	3470	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0027	3471	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0028	3470	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0029	3470	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0030	3470	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0031	3469	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0032	3470	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371