JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORBS1_chr10_95306773_95566371	0/0	t0033	3469	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0034	3471	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0035	3469	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0036	3471	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0037	3471	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0038	3472	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	t0039	3471	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS2_chr4_185580523_185817194	0/1	t0001	2874	51	2	22	19	3	4	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0002	2874	39	3	9	19	4	4	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0003	2874	29	5	3	19	1	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0004	2874	14	7	1	4	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0005	2874	12	5	2	4	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0006	2872	10	1	6	1	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0007	2874	10	6	1	0	0	3	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0008	2873	9	0	0	8	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0009	2874	9	0	5	3	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0010	2872	8	7	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0011	2874	8	0	5	0	0	3	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	1/0	t0012	2872	8	1	4	0	2	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0013	2874	7	0	1	5	1	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0014	2872	6	6	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0015	2874	6	0	2	1	1	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0016	2875	4	4	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0017	2873	4	2	0	0	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0018	2871	4	4	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0019	2875	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0020	2878	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0021	2875	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0022	2874	2	0	0	2	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0023	2874	2	0	1	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0024	2873	2	1	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0025	2875	2	0	1	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0026	2875	2	0	2	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0027	2872	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0028	2873	2	0	0	2	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0029	2873	2	1	0	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0030	2874	2	0	0	0	1	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0031	2871	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0032	2874	2	0	0	0	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0033	2871	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0034	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0035	2872	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0036	2874	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0037	2872	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0038	2878	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0039	2875	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0040	2874	1	0	0	0	1	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0041	2872	1	0	0	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0042	2872	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0043	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194