Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOXL_chr2_110727573_111123548	0/0	t0007	957	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACP1_chr2_259947_283283	1/1	t0001	998	292	57	51	149	12	21	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0002	998	90	29	23	11	6	21	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0003	998	2	2	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0004	998	2	2	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0005	998	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0006	998	1	0	0	0	0	1	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0007	998	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	t0008	998	1	0	0	0	0	1	copy fasta	ACP1	chr2	259947	283283
ACP2_chr11_47234302_47253814	0/1	t0001	840	286	77	55	116	7	30	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	t0002	840	45	8	18	5	5	9	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	t0003	840	17	0	1	12	2	2	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	1/0	t0004	840	7	6	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	t0005	840	1	0	0	0	0	1	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	t0006	840	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	t0007	840	1	0	0	1	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP3_chr3_132312407_132363841	0/0	t0001	2018	62	2	9	38	3	10	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0002	2018	40	0	5	32	0	3	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0003	2018	38	9	13	10	2	4	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0004	2014	35	15	7	2	0	11	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0005	2014	27	0	1	24	0	2	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/1	t0006	2006	26	0	8	7	3	7	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	1/0	t0007	2014	18	3	4	7	1	2	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0008	2014	18	11	4	2	0	1	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0009	2014	15	12	1	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0010	2022	12	6	1	3	1	1	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0011	2022	9	0	4	5	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0012	2018	6	5	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0013	2022	6	0	0	6	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0014	2022	5	5	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0015	2018	5	0	5	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0016	2018	4	3	0	0	1	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0017	2018	4	1	1	1	1	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0018	2010	3	2	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0019	2022	3	0	2	0	0	1	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0020	2010	3	3	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0021	2010	3	2	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0022	2018	3	3	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0023	2006	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0024	2010	2	0	1	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0025	2014	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0026	2014	2	2	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0027	2018	2	0	0	0	0	2	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0028	2006	2	2	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0029	2018	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0030	2014	1	1	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0031	2006	1	0	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0032	2014	1	1	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0033	2018	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0034	2026	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841