JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BHLHE22_chr8_64575365_64588627	0/0	t0008	2118	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0009	2118	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0010	2120	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0011	2118	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0012	2118	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0013	2118	1	0	0	0	0	1	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0014	2118	1	0	0	0	0	1	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0015	2118	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	t0016	2119	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE23_chr20_63000927_63011964	0/1	t0001	313	420	89	72	197	16	45	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	1/0	t0002	313	19	6	8	3	0	1	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	t0003	313	3	2	1	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	t0004	313	3	2	1	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	t0005	313	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE40_chr3_4974437_4990323	0/0	t0001	1918	215	21	30	133	9	22	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0002	1920	46	0	13	27	1	5	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/1	t0003	1920	35	14	5	10	5	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	1/0	t0004	1914	26	17	5	2	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0005	1916	15	0	0	14	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0006	1924	13	9	3	0	1	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0007	1908	7	7	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0008	1918	6	0	6	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0009	1916	5	2	2	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0010	1920	5	5	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0011	1918	5	0	3	0	1	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0012	1920	4	1	1	2	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0013	1926	4	4	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0014	1916	4	0	4	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0015	1918	3	0	0	3	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0016	1922	3	0	0	3	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0017	1918	3	0	0	0	1	2	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0018	1920	3	0	2	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0019	1918	2	0	2	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0020	1920	2	2	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0021	1920	2	0	2	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0022	1918	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0023	1916	1	0	1	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0024	1916	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0025	1914	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0026	1914	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0027	1914	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0028	1918	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0029	1918	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0030	1918	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0031	1924	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0032	1920	1	0	1	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0033	1924	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0034	1924	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0035	1924	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0036	1920	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323