JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORBS2_chr4_185580523_185817194	0/0	t0044	2874	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0045	2871	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0046	2872	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0047	2874	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0048	2874	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0049	2874	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0050	2872	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0051	2875	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0052	2875	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0053	2874	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0054	2875	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0055	2874	1	0	0	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0056	2878	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0057	2875	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0058	2875	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0059	2874	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0060	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0061	2873	1	0	0	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0062	2874	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0063	2871	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0064	2878	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0065	2875	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0066	2875	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0067	2879	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0068	2875	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0069	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0070	2872	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0071	2874	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0072	2877	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0073	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0074	2873	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	t0075	2873	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS3_chr8_22546927_22580788	0/0	t0001	1212	260	49	39	145	5	22	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0002	1212	129	25	33	35	13	23	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0003	1212	10	0	0	10	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0004	1212	5	5	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0005	1212	5	5	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0006	1212	3	2	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0007	1212	3	3	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0008	1212	2	1	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0009	1212	2	0	0	2	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0010	1212	2	2	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0011	1212	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0012	1212	1	0	0	0	0	1	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0013	1212	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0014	1212	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0015	1212	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0016	1212	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	t0017	1212	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORCS1_chr10_106568663_107169706	0/0	t0001	3939	46	27	5	12	0	2	copy fasta	SORCS1	chr10	106568663	107169706