JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORCS1_chr10_106568663_107169706	0/0	t0002	3938	31	12	11	6	0	2	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0003	3941	13	3	0	9	0	1	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0004	3939	11	3	0	7	0	1	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0005	3939	5	4	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0006	3940	4	4	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0007	3940	3	3	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0008	3939	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0009	3938	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0010	3939	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0011	3938	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0012	3939	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0013	3938	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0014	3939	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0015	3938	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0016	3939	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0017	3938	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0018	3938	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0019	3938	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0020	3938	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0021	3940	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0022	3938	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0023	3939	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	t0024	3941	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS2_chr4_7187538_7747827	0/0	t0001	2675	19	13	3	1	1	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0002	2673	9	0	2	7	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0003	2673	9	1	5	0	0	3	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0004	2673	7	7	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0005	2673	6	0	3	0	0	3	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0006	2673	6	1	3	1	1	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0007	2673	5	2	2	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0008	2673	5	0	5	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0009	2674	4	0	1	0	2	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0010	2675	4	0	0	2	0	2	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0011	2675	4	2	0	0	0	2	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0012	2675	4	0	4	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0013	2674	4	4	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0014	2674	3	1	0	2	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0015	2673	3	1	1	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0016	2673	3	2	0	0	1	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0017	2601	3	0	3	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0018	2673	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0019	2673	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0020	2744	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0021	2745	2	1	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0022	2674	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0023	2673	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0024	2674	2	0	0	0	0	2	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0025	2674	2	0	2	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0026	2664	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0027	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827