JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORCS2_chr4_7187538_7747827	0/0	t0028	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0029	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0030	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0031	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0032	2675	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0033	2602	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0034	2675	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0035	2674	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0036	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0037	2674	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0038	2675	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0039	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0040	2674	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0041	2673	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0042	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0043	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0044	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0045	2673	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0046	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0047	2601	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0048	2602	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0049	2745	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0050	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0051	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0052	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0053	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0054	2675	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0055	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0056	2673	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0057	2601	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0058	2745	1	0	0	0	1	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0059	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0060	2674	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0061	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0062	2673	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0063	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0064	2601	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0065	2673	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0066	2674	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0067	2675	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0068	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0069	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0070	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0071	2673	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0072	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0073	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0074	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0075	2673	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	t0076	2674	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS3_chr10_104636290_105270242	0/0	t0001	1907	63	25	14	12	3	9	copy fasta	SORCS3	chr10	104636290	105270242