JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORCS3_chr10_104636290_105270242	0/0	t0002	1907	38	9	13	10	2	4	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0003	1907	13	12	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0004	1907	13	2	5	4	1	1	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0005	1907	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0006	1907	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0007	1907	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0008	1907	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0009	1907	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0010	1907	1	0	0	0	0	1	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	t0011	1907	1	0	0	0	0	1	copy fasta	SORCS3	chr10	104636290	105270242
SORD_chr15_45018195_45082185	1/1	t0001	3745	179	17	42	85	10	23	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0002	3742	19	19	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0003	3742	17	16	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0004	3744	14	0	0	14	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0005	3744	10	5	4	0	0	1	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0006	3744	5	5	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0007	3745	5	4	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0008	3745	5	4	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0009	3745	4	0	0	4	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0010	3742	4	4	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0011	3744	3	3	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0012	3744	3	2	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0013	3742	3	0	3	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0014	3745	2	2	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0015	3744	2	0	2	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0016	3744	2	0	0	0	0	2	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0017	3745	2	2	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0018	3745	2	0	0	0	0	2	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0019	3745	2	0	1	0	0	1	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0020	3744	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0021	3745	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0022	3745	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0023	3742	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0024	3745	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0025	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0026	3744	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0027	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0028	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0029	3745	1	0	0	0	0	1	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0030	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0031	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0032	3745	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0033	3745	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0034	3745	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0035	3745	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0036	3745	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0037	3742	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0038	3743	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0039	3742	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0040	3742	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185