JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORD_chr15_45018195_45082185	0/0	t0041	3742	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0042	3742	1	0	1	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0043	3743	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	t0044	3742	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORL1_chr11_121447314_121638763	0/0	t0001	4224	88	1	19	51	4	13	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	1/1	t0002	4219	66	15	16	22	0	11	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0003	4219	24	23	1	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0004	4219	22	0	3	19	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0005	4219	12	10	2	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0006	4219	7	0	0	6	0	1	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0007	4219	7	7	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0008	4219	5	4	1	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0009	4219	4	0	4	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0010	4219	3	3	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0011	4219	3	3	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0012	4219	3	0	1	0	2	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0013	4219	3	3	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0014	4219	3	3	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0015	4219	2	0	0	2	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0016	4219	2	1	1	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0017	4219	2	0	0	2	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0018	4219	2	0	1	0	0	1	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0019	4224	2	0	1	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0020	4219	2	0	1	0	0	1	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0021	4219	1	0	0	0	1	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0022	4224	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0023	4224	1	0	1	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0024	4224	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0025	4224	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0026	4224	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0027	4219	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0028	4219	1	0	0	0	0	1	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0029	4224	1	0	0	0	1	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	t0030	4219	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORT1_chr1_109304575_109402918	0/1	t0001	4492	56	4	20	21	2	8	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0002	4492	55	13	10	18	3	11	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0003	4496	37	8	11	5	3	10	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	1/0	t0004	4495	22	17	2	0	2	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0005	4492	9	9	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0006	4496	5	5	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0007	4492	5	0	3	0	0	2	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0008	4492	5	5	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0009	4492	4	0	4	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0010	4492	4	4	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0011	4492	3	2	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0012	4492	3	3	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0013	4494	3	3	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0014	4493	2	0	0	2	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0015	4492	2	2	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0016	4496	2	1	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918