JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SORT1_chr1_109304575_109402918	0/0	t0017	4491	1	0	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0018	4491	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0019	4491	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0020	4492	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0021	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0022	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0023	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0024	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0025	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0026	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0027	4492	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0028	4491	1	0	0	0	1	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0029	4492	1	0	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0030	4492	1	0	0	1	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0031	4492	1	0	0	0	1	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0032	4492	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0033	4495	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0034	4494	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0035	4496	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0036	4496	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0037	4496	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0038	4494	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	t0039	4492	1	0	0	1	0	0	copy fasta	SORT1	chr1	109304575	109402918
SOS1_chr2_38976549_39126051	0/0	t0001	4908	66	8	15	33	2	8	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0002	4894	42	2	1	35	0	4	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0003	4908	37	13	10	5	2	7	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0004	4910	29	21	2	6	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0005	4906	16	12	4	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0006	4897	7	0	1	4	0	2	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0007	4906	3	3	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0008	4912	3	0	0	3	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0009	4908	3	0	0	3	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0010	4908	3	0	0	0	0	3	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0011	4908	3	0	0	3	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0012	4905	3	3	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0013	4908	2	0	0	2	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/1	t0014	4908	2	0	0	0	0	1	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0015	4894	2	0	2	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0016	4906	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0017	4912	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0018	4906	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0019	4906	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0020	4910	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0021	4907	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0022	4905	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	1/0	t0023	4905	1	0	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0024	4910	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0025	4912	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0026	4906	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0027	4908	1	0	0	0	0	1	copy fasta	SOS1	chr2	38976549	39126051