JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOS1_chr2_38976549_39126051	0/0	t0028	4908	1	0	1	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0029	4908	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0030	4909	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0031	4910	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0032	4910	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0033	4908	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0034	4906	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0035	4894	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0036	4894	1	0	0	0	0	1	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0037	4894	1	0	0	0	0	1	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0038	4894	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0039	4901	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	t0040	4898	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS2_chr14_50112130_50236578	1/1	t0001	1510	359	82	71	151	14	39	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0002	1510	5	0	0	5	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0003	1510	4	0	0	0	0	4	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0004	1510	2	0	2	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0005	1510	2	2	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0006	1510	2	0	0	2	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0007	1510	2	2	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0008	1510	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0009	1510	1	0	1	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0010	1510	1	0	0	1	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0011	1510	1	0	0	0	0	1	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0012	1510	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	t0013	1510	1	0	0	1	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOSTDC1_chr7_16456481_16470738	0/1	t0001	1138	204	57	23	98	7	18	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0002	1138	172	22	42	82	5	21	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	1/0	t0003	1138	33	6	3	12	2	9	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0004	1138	3	3	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0005	1138	3	0	0	3	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0006	1138	2	2	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0007	1138	1	0	0	1	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0008	1138	1	1	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0009	1138	1	1	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0010	1138	1	1	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	t0011	1138	1	1	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOST_chr17_43748738_43763791	1/0	t0001	1655	207	37	45	94	9	21	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0002	1656	168	20	32	88	2	26	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0003	1654	18	18	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0004	1654	5	5	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0005	1655	5	0	2	0	2	1	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0006	1654	4	4	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/1	t0007	1655	3	0	2	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0008	1655	2	2	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0009	1654	2	1	1	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0010	1655	2	2	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0011	1655	1	1	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0012	1656	1	1	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	t0013	1654	1	1	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791