JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOWAHC_chr2_109609364_109623990	0/0	t0005	3045	23	2	5	5	1	10	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0006	3049	19	13	4	2	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0007	3051	13	3	6	0	2	2	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0008	3051	8	7	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0009	3049	8	1	0	6	0	1	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0010	3052	7	6	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0011	3050	5	0	0	5	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0012	3050	5	2	2	1	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0013	3050	4	4	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0014	3051	4	0	0	4	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0015	3049	3	0	0	3	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0016	3050	2	0	0	1	0	1	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0017	3051	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0018	3049	1	1	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0019	3052	1	0	0	0	0	1	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0020	3050	1	1	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0021	3051	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0022	1819	1	0	0	1	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0023	3050	1	0	0	1	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	t0024	3049	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHD_chrX_119753588_119765202	1/1	t0001	668	315	73	56	137	13	34	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	t0002	668	6	5	1	0	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	t0003	670	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOX10_chr22_37967312_37989555	0/1	t0001	1485	167	28	31	82	6	19	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	1/0	t0002	1485	130	39	25	43	4	18	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0003	1485	16	16	0	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0004	1486	8	1	2	4	0	1	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0005	1486	5	2	1	2	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0006	1485	2	0	0	0	0	2	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0007	1483	2	0	0	2	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0008	1485	2	1	1	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0009	1485	1	1	0	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0010	1486	1	1	0	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0011	1484	1	0	0	1	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	t0012	1486	1	1	0	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX11_chr2_5687384_5706385	0/0	t0001	7674	28	1	6	14	2	5	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0002	7673	26	4	2	14	0	6	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0003	7659	17	1	8	0	4	4	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0004	7663	12	0	3	9	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0005	7664	12	4	1	5	2	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0006	7675	9	0	0	6	1	2	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0007	7678	8	8	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0008	7666	7	0	3	1	1	2	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0009	7674	7	3	0	3	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0010	7669	7	0	0	7	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0011	7669	7	0	0	6	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0012	7670	7	0	0	7	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0013	7669	6	0	2	4	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0014	7673	6	0	1	4	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0015	7668	6	0	0	5	0	1	copy fasta	SOX11	chr2	5687384	5706385