Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BHLHE40_chr3_4974437_4990323	0/0	t0037	1926	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0038	1930	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0039	1927	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0040	1918	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0041	1926	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0042	1916	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0043	1916	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0044	1916	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0045	1914	1	0	0	0	0	1	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0046	1914	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0047	1920	1	0	1	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0048	1918	1	0	1	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	t0049	1926	1	1	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE41_chr12_26115030_26130037	0/1	t0001	2295	210	17	36	125	8	23	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	1/0	t0002	2295	138	60	26	35	6	10	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0003	2295	15	11	1	2	0	1	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0004	2295	12	0	0	12	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0005	2295	8	1	0	0	0	7	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0006	2295	6	0	1	0	2	3	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0007	2295	5	0	0	5	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0008	2295	3	0	3	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0009	2300	3	0	0	3	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0010	2300	2	0	0	2	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0011	2295	2	2	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0012	2295	2	0	0	2	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0013	2285	2	0	2	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0014	2295	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0015	2295	1	0	1	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0016	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0017	2295	1	0	0	0	0	1	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0018	2295	1	0	1	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0019	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0020	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0021	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0022	2295	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0023	2295	1	0	1	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0024	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0025	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0026	2295	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	t0027	2285	1	0	0	0	0	1	copy fasta	BHLHE41	chr12	26115030	26130037
BHMT2_chr5_79064767_79095069	1/1	t0001	1512	189	49	32	79	7	20	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0002	1512	105	4	22	65	2	12	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0003	1513	51	24	0	20	1	6	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0004	1512	21	2	8	1	4	6	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0005	1513	4	4	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0006	1513	3	3	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0007	1512	2	0	2	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0008	1513	2	0	0	1	0	1	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0009	1512	2	0	2	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0010	1512	2	0	0	2	0	0	copy fasta	BHMT2	chr5	79064767	79095069