JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX11_chr2_5687384_5706385	0/0	t0066	7659	1	0	0	0	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0067	7663	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0068	7660	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0069	7660	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0070	7661	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0071	7667	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0072	7668	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0073	7669	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0074	7675	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0075	7676	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0076	7676	1	0	0	0	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0077	7668	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0078	7669	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0079	7675	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0080	7670	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0081	7671	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0082	7671	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0083	7671	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0084	7660	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0085	7671	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0086	7696	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0087	7674	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0088	7672	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0089	7672	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0090	7673	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0091	7675	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0092	7673	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0093	7672	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0094	7673	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0095	7674	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0096	7666	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0097	7673	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0098	7674	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0099	7675	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0100	7725	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0101	7675	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0102	7665	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0103	7675	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0104	7671	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0105	7673	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0106	7674	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0107	7673	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0108	7668	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0109	7673	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0110	7668	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0111	7674	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0112	7673	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0113	7668	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0114	7668	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0115	7674	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385