JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX11_chr2_5687384_5706385	0/0	t0116	7667	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0117	7668	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0118	7664	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0119	7674	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0120	7676	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0121	7675	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0122	7675	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0123	7668	1	0	0	0	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0124	7674	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0125	7674	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0126	7674	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0127	7667	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0128	7675	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0129	7677	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0130	7677	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0131	7677	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0132	7669	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0133	7678	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0134	7677	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0135	7668	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0136	7676	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0137	7669	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0138	7675	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0139	7676	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0140	7670	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0141	7671	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0142	7666	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0143	7671	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0144	7671	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0145	7678	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0146	7668	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0147	7669	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0148	7677	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0149	7670	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0150	7692	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0151	7661	1	0	0	0	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0152	7661	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0153	7663	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0154	7668	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0155	7672	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0156	7672	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0157	7661	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0158	7663	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0159	7666	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0160	7664	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0161	7667	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0162	7667	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0163	7671	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0164	7667	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0165	7668	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385