JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX11_chr2_5687384_5706385	0/0	t0166	7677	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0167	7677	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0168	7669	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0169	7663	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0170	7667	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0171	7664	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0172	7665	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0173	7670	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0174	7665	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0175	7670	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0176	7676	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0177	7678	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0178	7670	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0179	7665	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0180	7665	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0181	7673	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0182	7665	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0183	7666	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0184	7671	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0185	7677	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0186	7678	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0187	7679	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0188	7667	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0189	7669	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0190	7676	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0191	7672	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0192	7669	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0193	7681	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0194	7660	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0195	7668	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0196	7677	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0197	7672	1	0	0	0	0	1	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0198	7672	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0199	7676	1	0	0	0	1	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0200	7676	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0201	7668	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/1	t0202	7677	1	0	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	1/0	t0203	7677	1	0	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	t0204	7678	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX12_chr20_320552_335224	0/1	t0001	3725	234	30	56	109	9	29	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0002	3734	26	0	1	20	1	4	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0003	3724	22	2	2	12	4	2	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0004	3733	11	8	0	3	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0005	3730	6	4	2	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0006	3734	5	5	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0007	3729	5	5	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0008	3729	4	4	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0009	3729	3	3	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0010	3734	3	3	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0011	3733	3	0	0	3	0	0	copy fasta	SOX12	chr20	320552	335224