JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX12_chr20_320552_335224	0/0	t0062	3729	1	1	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0063	3734	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0064	3725	1	0	0	0	0	1	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0065	3725	1	1	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0066	3726	1	1	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0067	3724	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0068	3725	1	0	0	0	0	1	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	t0069	3725	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224
SOX13_chr1_204068115_204132743	0/0	t0001	2207	165	19	43	78	6	19	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0002	2207	60	2	4	46	3	5	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0003	2207	27	4	11	9	3	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/1	t0004	2207	15	10	2	1	0	1	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	1/0	t0005	2207	15	13	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0006	2207	13	13	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0007	2208	10	0	0	9	0	1	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0008	2207	9	1	4	0	0	4	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0009	2207	8	5	0	0	2	1	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0010	2207	7	4	0	2	0	1	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0011	2207	5	1	0	3	0	1	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0012	2207	4	3	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0013	2207	3	3	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0014	2207	3	0	0	0	0	3	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0015	2207	2	2	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0016	2207	2	2	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0017	2207	2	2	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0018	2207	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0019	2207	1	1	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0020	2207	1	0	0	0	1	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0021	2207	1	0	0	0	1	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0022	2215	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0023	2215	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0024	2216	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0025	2207	1	1	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0026	2207	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0027	2207	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0028	2207	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0029	2207	1	1	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0030	2207	1	1	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	t0031	2207	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX14_chr3_137759315_137771334	0/1	t0001	1298	226	25	39	132	5	24	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	1/0	t0002	1298	65	26	15	10	1	12	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0003	1298	58	18	11	18	7	4	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0004	1298	17	5	1	10	0	1	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0005	1298	13	11	2	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0006	1298	5	0	0	4	1	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0007	1298	3	3	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0008	1298	2	2	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0009	1298	2	0	2	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0010	1298	1	0	0	0	0	1	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	t0011	1298	1	0	0	1	0	0	copy fasta	SOX14	chr3	137759315	137771334