JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX2_chr3_181706925_181719436	0/0	t0003	1559	30	4	6	20	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0004	1559	18	1	12	5	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0005	1559	9	8	1	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0006	1560	6	0	0	6	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0007	1559	5	5	0	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0008	1559	3	0	2	0	1	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0009	1559	1	0	1	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0010	1559	1	0	1	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0011	1559	1	0	1	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0012	1559	1	0	0	0	0	1	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0013	1559	1	1	0	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0014	1559	1	0	0	1	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0015	1560	1	0	0	1	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	t0016	1560	1	0	0	1	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX30_chr5_157620679_157657438	1/1	t0001	1022	317	39	52	181	12	31	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0002	1022	27	14	9	0	2	2	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0003	1022	18	18	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0004	1021	7	4	3	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0005	1022	6	5	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0006	1022	3	0	0	3	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0007	1022	3	0	0	3	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0008	1022	2	2	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0009	1022	2	2	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0010	1022	2	2	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0011	1022	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0012	1022	1	0	0	0	0	1	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0013	1021	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0014	1022	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0015	1022	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0016	1022	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	t0017	1022	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX3_chrX_140497985_140510069	1/1	t0001	745	328	76	57	152	11	30	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0002	745	2	0	2	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0003	745	2	1	1	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0004	745	1	1	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0005	745	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0006	741	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0007	745	1	1	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0008	746	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0009	743	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	t0010	743	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX4_chr6_21588751_21603619	0/1	t0001	3444	148	42	31	48	7	19	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0002	3437	101	7	10	76	1	7	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0003	3443	19	0	6	9	0	4	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	1/0	t0004	3445	8	0	3	1	0	3	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0005	3438	7	0	2	4	0	1	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0006	3441	6	0	1	3	0	2	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0007	3441	6	6	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0008	3447	6	6	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0009	3443	5	5	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619