JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX4_chr6_21588751_21603619	0/0	t0010	3443	4	4	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0011	3446	3	3	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0012	3443	3	3	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0013	3442	3	0	1	0	2	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0014	3443	2	2	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0015	3444	2	0	1	0	1	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0016	3442	1	0	0	0	0	1	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0017	3443	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0018	3442	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0019	3441	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0020	3442	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0021	3441	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0022	3443	1	0	0	0	1	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0023	3444	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0024	3437	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0025	3444	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0026	3441	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0027	3441	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0028	3443	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0029	3437	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0030	3437	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0031	3445	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0032	3437	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0033	3442	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0034	3444	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0035	3444	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0036	3446	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0037	3433	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0038	3437	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0039	3444	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0040	3437	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0041	3444	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0042	3438	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0043	3437	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0044	3444	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0045	3436	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0046	3442	1	0	0	0	0	1	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0047	3445	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	t0048	3444	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX5_chr12_23524504_23954670	1/0	t0001	4785	14	12	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/1	t0002	4787	12	3	5	0	0	3	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0003	4811	6	6	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0004	4809	5	5	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0005	4819	5	0	0	5	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0006	4817	5	1	1	3	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0007	4785	5	3	2	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0008	4810	5	1	3	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0009	4808	5	0	2	3	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0010	4812	4	0	3	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0011	4812	3	0	1	0	0	2	copy fasta	SOX5	chr12	23524504	23954670