JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX5_chr12_23524504_23954670	0/0	t0012	4810	3	0	3	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0013	4806	3	1	0	0	2	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0014	4812	3	1	0	1	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0015	4808	3	1	0	1	1	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0016	4810	3	3	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0017	4789	3	0	2	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0018	4785	3	3	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0019	4827	2	0	0	2	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0020	4781	2	2	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0021	4817	2	0	1	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0022	4814	2	1	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0023	4808	2	0	2	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0024	4804	2	0	0	1	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0025	4781	2	2	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0026	4806	2	0	0	1	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0027	4787	2	2	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0028	4812	2	0	0	2	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0029	4816	2	0	0	1	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0030	4818	2	0	1	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0031	4816	2	1	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0032	4814	2	0	1	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0033	4815	2	0	0	2	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0034	4814	2	1	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0035	4812	2	0	0	2	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0036	4817	2	2	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0037	4802	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0038	4804	1	0	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0039	4807	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0040	4825	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0041	4815	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0042	4813	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0043	4817	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0044	4821	1	0	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0045	4813	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0046	4821	1	0	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0047	4815	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0048	4813	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0049	4811	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0050	4825	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0051	4823	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0052	4821	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0053	4819	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0054	4793	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0055	4815	1	0	0	0	1	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0056	4811	1	0	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0057	4795	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0058	4816	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0059	4810	1	0	0	0	0	1	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0060	4818	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0061	4808	1	0	1	0	0	0	copy fasta	SOX5	chr12	23524504	23954670