Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BHMT2_chr5_79064767_79095069	0/0	t0011	1513	2	2	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0012	1513	2	2	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0013	1513	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0014	1512	1	0	0	1	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0015	1513	1	0	0	1	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0016	1534	1	0	0	0	0	1	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	t0017	1512	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT_chr5_79106809_79137288	0/1	t0001	1250	376	86	69	175	12	33	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	1/0	t0002	1250	45	2	4	25	4	9	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0003	1252	3	3	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0004	1250	3	3	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0005	1250	2	1	1	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0006	1250	1	1	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0007	1250	1	0	0	1	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	t0008	1250	1	0	0	1	0	0	copy fasta	BHMT	chr5	79106809	79137288
BICC1_chr10_58507872_58836435	0/0	t0001	2817	13	1	5	4	2	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0002	2816	11	5	1	3	1	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/1	t0003	2817	9	3	1	0	2	2	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0004	2818	9	5	0	3	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0005	2818	7	0	4	2	1	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0006	2818	7	1	2	3	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0007	2816	6	2	2	2	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0008	2819	5	0	3	2	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	1/0	t0009	2817	4	1	2	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0010	2818	4	1	2	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0011	2819	4	1	1	1	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0012	2815	3	1	0	1	1	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0013	2818	3	3	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0014	2805	2	2	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0015	2817	2	2	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0016	2818	2	2	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0017	2819	2	0	1	0	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0018	2815	2	2	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0019	2817	2	2	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0020	2819	2	1	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0021	2818	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0022	2816	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0023	2814	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0024	2815	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0025	2819	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0026	2817	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0027	2815	1	0	0	0	1	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0028	2816	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0029	2816	1	0	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0030	2817	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0031	2817	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0032	2819	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0033	2818	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0034	2819	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0035	2820	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435