JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX5_chr12_23524504_23954670	0/0	t0112	4828	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0113	4824	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0114	4818	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0115	4819	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0116	4820	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0117	4821	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0118	4819	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0119	4815	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0120	4815	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0121	4817	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	t0122	4808	1	0	0	1	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX6_chr11_15961449_16361546	1/1	t0001	6818	44	8	11	17	1	5	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0002	6816	36	0	5	31	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0003	6818	33	19	4	10	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0004	6818	24	1	11	7	0	5	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0005	6816	9	4	3	2	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0006	6818	9	1	0	8	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0007	6817	5	0	2	3	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0008	6818	4	0	2	1	0	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0009	6819	4	4	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0010	6816	3	0	0	2	0	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0011	6817	3	0	0	1	0	2	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0012	6819	3	2	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0013	6812	3	1	0	0	1	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0014	6816	2	2	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0015	6818	2	2	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0016	6816	2	0	0	2	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0017	6817	2	1	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0018	6819	2	2	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0019	6818	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0020	6816	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0021	6818	1	0	0	0	0	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0022	6817	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0023	6818	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0024	6817	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0025	6813	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0026	6819	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0027	6818	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0028	6818	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0029	6819	1	0	1	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0030	6817	1	0	0	0	0	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0031	6822	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0032	6819	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0033	6819	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0034	6818	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0035	6818	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0036	6818	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0037	6817	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0038	6819	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0039	6813	1	0	1	0	0	0	copy fasta	SOX6	chr11	15961449	16361546