JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX6_chr11_15961449_16361546	0/0	t0040	6818	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0041	6818	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0042	6819	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0043	6820	1	0	0	0	0	1	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0044	6819	1	1	0	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0045	6819	1	0	1	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	t0046	6819	1	0	1	0	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX7_chr8_10718768_10735511	0/1	t0001	2049	135	22	35	48	11	18	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	1/0	t0002	2049	127	10	21	77	4	14	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0003	2049	39	13	9	14	1	2	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0004	2049	38	0	4	34	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0005	2050	16	15	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0006	2049	10	0	1	9	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0007	2049	8	0	8	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0008	2049	7	0	1	1	1	4	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0009	2049	6	6	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0010	2049	6	1	0	3	0	2	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0011	2048	6	6	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0012	2048	5	5	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0013	2048	5	5	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0014	2049	4	3	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0015	2048	4	0	0	0	0	4	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0016	2049	3	0	0	0	1	2	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0017	2049	3	0	0	3	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0018	2048	3	3	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0019	2049	3	0	0	3	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0020	2049	2	0	2	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0021	2049	2	1	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0022	2049	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0023	2048	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0024	2048	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0025	2050	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0026	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0027	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0028	2048	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0029	2049	1	0	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0030	2050	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0031	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0032	2049	1	0	0	0	0	1	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0033	2049	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0034	2048	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0035	2050	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0036	2050	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0037	2049	1	0	0	0	0	1	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0038	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0039	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0040	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0041	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0042	2049	1	0	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0043	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511