JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX7_chr8_10718768_10735511	0/0	t0044	2049	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0045	2049	1	0	0	0	0	1	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0046	2048	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0047	2049	1	0	0	0	0	1	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0048	2048	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0049	2048	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0050	2048	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	t0051	2049	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX8_chr16_976770_991979	1/0	t0001	1747	167	10	29	110	3	14	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0002	1753	67	14	6	37	1	9	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0003	1747	34	16	13	0	2	3	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0004	1747	19	3	8	3	1	4	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0005	1747	18	1	2	12	3	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0006	1747	14	12	2	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0007	1747	10	0	1	5	1	3	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0008	1747	9	1	4	0	2	2	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0009	1753	9	0	4	5	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/1	t0010	1753	9	0	4	1	0	3	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0011	1753	7	7	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0012	1747	6	0	5	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0013	1743	5	0	1	0	2	2	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0014	1747	5	5	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0015	1747	3	2	1	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0016	1753	3	3	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0017	1756	3	0	0	3	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0018	1744	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0019	1748	2	0	0	2	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0020	1747	2	0	2	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0021	1747	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0022	1747	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0023	1747	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0024	1747	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0025	1753	2	0	0	2	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0026	1753	2	0	0	1	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0027	1747	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0028	1744	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0029	1747	1	0	0	0	1	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0030	1743	1	0	1	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0031	1747	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0032	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0033	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0034	1747	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0035	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0036	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0037	1747	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0038	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0039	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0040	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0041	1747	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0042	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979