JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX8_chr16_976770_991979	0/0	t0043	1748	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0044	1747	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0045	1747	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0046	1753	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0047	1753	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0048	1753	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0049	1753	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0050	1754	1	0	1	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0051	1753	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0052	1754	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0053	1753	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	t0054	1753	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX9_chr17_72116020_72131416	0/1	t0001	2401	115	4	28	62	6	14	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	1/0	t0002	2402	79	24	17	20	3	14	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0003	2402	47	12	2	30	1	2	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0004	2401	36	7	13	4	4	8	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0005	2402	22	5	5	11	0	1	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0006	2403	11	6	0	5	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0007	2403	11	1	1	6	0	3	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0008	2402	11	0	1	10	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0009	2402	8	6	2	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0010	2403	7	3	0	4	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0011	2400	5	4	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0012	2400	4	0	0	4	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0013	2401	3	3	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0014	2401	3	3	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0015	2403	3	0	1	2	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0016	2401	3	0	0	3	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0017	2403	3	3	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0018	2402	3	3	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0019	2400	2	2	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0020	2401	2	0	0	2	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0021	2401	2	0	0	2	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0022	2401	2	1	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0023	2400	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0024	2402	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0025	2402	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0026	2402	1	0	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0027	2402	1	0	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0028	2402	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0029	2402	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0030	2403	1	0	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0031	2401	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0032	2402	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0033	2402	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0034	2402	1	0	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0035	2403	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0036	2401	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0037	2401	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0038	2403	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416