JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SOX9_chr17_72116020_72131416	0/0	t0039	2401	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0040	2402	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0041	2402	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	t0042	2401	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SP100_chr2_230411201_230550606	1/1	t0001	2757	62	11	9	33	1	6	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0002	2757	55	6	27	10	3	9	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0003	2759	50	4	13	21	5	7	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0004	2757	23	10	3	2	4	4	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0005	2757	11	0	0	11	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0006	2758	10	10	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0007	2757	10	4	5	0	1	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0008	2758	9	9	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0009	2757	9	0	2	7	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0010	2757	8	0	2	1	0	5	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0011	2758	6	6	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0012	2757	6	6	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0013	2757	6	5	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0014	2758	4	3	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0015	2756	4	0	0	4	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0016	2757	3	3	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0017	2757	2	2	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0018	2757	2	2	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0019	2757	2	1	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0020	2757	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0021	2758	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0022	2757	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0023	2757	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0024	2757	1	0	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0025	2757	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0026	2757	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	t0027	2757	1	0	0	0	0	1	copy fasta	SP100	chr2	230411201	230550606
SP110_chr2_230160186_230224984	0/1	t0001	4050	100	14	13	60	1	11	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0002	4019	54	15	4	26	5	4	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0003	4035	36	2	13	16	3	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0004	4029	24	1	6	12	0	5	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0005	4051	23	1	2	19	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0006	4052	13	11	0	1	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0007	4027	11	1	3	0	3	4	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0008	4051	11	1	8	0	1	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0009	4033	9	8	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0010	4029	8	0	1	7	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0011	4036	6	1	0	4	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0012	4051	6	1	1	3	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0013	4035	5	5	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0014	4034	5	5	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0015	4028	5	0	3	0	0	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0016	4030	4	0	0	3	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0017	4032	4	1	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0018	4051	4	1	0	2	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0019	4049	4	0	0	0	1	3	copy fasta	SP110	chr2	230160186	230224984