JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SP110_chr2_230160186_230224984	0/0	t0020	4030	3	0	0	1	1	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0021	4051	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	1/0	t0022	4050	3	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0023	4052	3	1	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0024	4039	2	0	1	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0025	4020	2	0	0	1	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0026	4024	2	0	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0027	4030	2	0	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0028	4036	2	1	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0029	4035	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0030	4035	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0031	4031	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0032	4024	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0033	4050	2	0	2	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0034	4050	2	1	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0035	4052	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0036	4052	2	0	2	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0037	4052	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0038	4043	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0039	4038	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0040	4042	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0041	4038	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0042	4038	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0043	4039	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0044	4040	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0045	4018	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0046	4020	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0047	4019	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0048	4019	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0049	4021	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0050	4020	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0051	4031	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0052	4028	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0053	4029	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0054	4029	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0055	4035	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0056	4029	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0057	4030	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0058	4030	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0059	4028	1	0	0	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0060	4025	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0061	4036	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0062	4025	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0063	4030	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0064	4031	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0065	4030	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0066	4062	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0067	4036	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0068	4035	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	t0069	4034	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984