Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BICC1_chr10_58507872_58836435	0/0	t0036	2821	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0037	2815	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0038	2816	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0039	2817	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0040	2818	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0041	2819	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0042	2819	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0043	2821	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0044	2820	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0045	2816	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0046	2817	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0047	2816	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0048	2817	1	0	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0049	2818	1	0	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0050	2819	1	0	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0051	2818	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0052	2797	1	0	0	1	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	t0053	2821	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICD1_chr12_32101847_32388633	1/0	t0001	6492	46	7	10	20	3	5	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0002	6482	30	1	6	15	3	5	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0003	6492	29	4	10	11	0	4	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/1	t0004	6500	21	4	3	10	0	3	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0005	6490	20	2	0	17	1	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0006	6500	16	11	4	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0007	6500	13	5	1	7	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0008	6500	12	2	1	7	1	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0009	6492	12	5	0	4	0	3	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0010	6497	8	4	2	2	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0011	6492	7	0	4	0	1	2	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0012	6489	4	2	0	1	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0013	6492	4	1	0	0	0	3	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0014	6500	3	2	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0015	6500	3	3	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0016	6497	3	3	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0017	6492	3	3	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0018	6492	3	2	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0019	6489	3	3	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0020	6482	3	0	0	3	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0021	6490	2	0	0	2	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0022	6492	2	2	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0023	6492	2	2	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0024	6492	2	0	1	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0025	6482	2	0	0	2	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0026	6490	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0027	6490	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0028	6500	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0029	6500	1	0	0	1	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0030	6497	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0031	6500	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	t0032	6500	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633